STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
recD2_3ATP-dependent RecD-like DNA helicase. (1000 aa)    
Predicted Functional Partners:
YloA
Fibronectin-binding protein A N-terminus (FbpA).
  
    0.804
iolB
5-deoxy-glucuronate isomerase.
   
    0.722
AQS00111.1
Hypothetical protein.
  
    0.700
AQR98545.1
Hypothetical protein.
  
    0.686
AQR99950.1
Hypothetical protein.
  
    0.686
AQS00843.1
Transposase DDE domain protein.
  
    0.686
HsdM
Putative type I restriction enzymeP M protein.
 
  
 0.551
hsdR_1
Type-1 restriction enzyme R protein.
 
    0.537
AQR99094.1
Putative type I restriction enzymeP M protein.
 
  
 0.536
hsdM
Type I restriction enzyme EcoKI M protein.
 
  
 0.532
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.