STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01146.1Hypothetical protein. (203 aa)    
Predicted Functional Partners:
XkdS
Hypothetical protein.
 
 
 0.991
AQS01155.1
Phage tail sheath protein.
 
 
 0.967
XkdP
LysM domain/BON superfamily protein.
 
  
 0.964
XkdT2
Baseplate J-like protein.
 
    0.960
AQS00486.1
Phage tail sheath protein.
 
 
 0.956
AQS01706.1
Phage tail sheath protein.
 
 
 0.944
AQS01145.1
Hypothetical protein.
  
  
 0.935
AQS01702.1
Bacterial SH3 domain protein.
 
  
 0.854
AQS01699.1
Hypothetical protein.
  
 
 0.849
AQS01698.1
Baseplate J-like protein.
 
    0.829
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.