STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XkdT2Baseplate J-like protein. (362 aa)    
Predicted Functional Partners:
XkdS
Hypothetical protein.
 
 
 0.986
XkdP
LysM domain/BON superfamily protein.
 
 
 0.984
AQS01146.1
Hypothetical protein.
 
    0.960
AQS01155.1
Phage tail sheath protein.
 
 
 0.956
AQS00486.1
Phage tail sheath protein.
 
 
 0.942
AQS01702.1
Bacterial SH3 domain protein.
 
 
 0.932
AQS01706.1
Phage tail sheath protein.
 
 
 0.927
XkdT1
Hypothetical protein.
 
    0.827
AQS01696.1
Hypothetical protein.
 
    0.827
AQS01154.1
Hypothetical protein.
 
     0.815
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.