STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01163.1Phage Mu protein F like protein. (297 aa)    
Predicted Functional Partners:
AQS01165.1
Phage portal protein, SPP1 Gp6-like.
 
     0.901
AQS01166.1
Hypothetical protein.
 
     0.791
AQS01162.1
Hypothetical protein.
 
     0.783
AQS01160.1
Phage major capsid protein E.
 
     0.636
XtmA
Terminase small subunit.
 
     0.595
XkdP
LysM domain/BON superfamily protein.
 
     0.510
AQS01155.1
Phage tail sheath protein.
 
     0.500
XkdT2
Baseplate J-like protein.
 
     0.458
AQS01161.1
Hypothetical protein.
       0.458
AQS01715.1
Terminase-like family protein.
 
     0.453
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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