STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerD_5Tyrosine recombinase XerD. (315 aa)    
Predicted Functional Partners:
xerD_6
Tyrosine recombinase XerD.
  
     0.742
spoIIIE
DNA translocase SpoIIIE; Belongs to the FtsK/SpoIIIE/SftA family.
 
   
 0.596
AQS01198.1
Hypothetical protein.
     
 0.537
AQS01197.1
Hypothetical protein.
       0.519
soj
Sporulation initiation inhibitor protein Soj.
 
   
 0.502
parA
Chromosome partitioning protein ParA.
 
   
 0.489
noc
Nucleoid occlusion protein; Belongs to the ParB family.
  
  
 0.465
rpsA_2
30S ribosomal protein S1.
 
  
 0.444
ilvC_2
Ketol-acid reductoisomerase.
  
    0.434
AQR98731.1
DNA utilization protein GntX.
   
    0.426
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.