STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01363.1Hypothetical protein. (213 aa)    
Predicted Functional Partners:
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.868
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.868
asrA
Anaerobic sulfite reductase subunit A.
  
 
 0.797
AQS01763.1
Hypothetical protein.
  
 
 0.797
glcA
Glycolate permease GlcA; Transports L-lactate across the membrane. Can also transport D-lactate and glycolate; Belongs to the lactate permease family.
  
  
 0.738
AQS00454.1
Coat F domain protein.
  
 
   0.632
gpr_2
L-glyceraldehyde 3-phosphate reductase.
  
   0.612
AQR99912.1
Rubrerythrin.
    
   0.580
hxlR_1
HTH-type transcriptional activator HxlR.
       0.541
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
   0.513
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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