STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuRTranscriptional regulatory protein DcuR. (230 aa)    
Predicted Functional Partners:
citA
Sensor histidine kinase CitA.
 
 
 0.974
dcuS
Sensor histidine kinase DcuS.
 
 
 0.971
AQR98771.1
Sensory histidine kinase DcuS.
 
 
 0.898
dpiB
Sensor histidine kinase DpiB.
 
 
 0.865
cusS
Sensor kinase CusS.
 
 
 0.788
AQR98888.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.750
AQS00084.1
Putative histidine kinase sensor domain protein.
     
 0.663
barA_2
Signal transduction histidine-protein kinase BarA.
     
 0.620
barA_1
Signal transduction histidine-protein kinase BarA.
     
 0.529
cph1
Phytochrome-like protein cph1.
     
 0.482
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.