STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcuRTranscriptional regulatory protein DcuR. (230 aa)    
Predicted Functional Partners:
citA
Sensor histidine kinase CitA.
 
 
 0.963
dcuS
Sensor histidine kinase DcuS.
 
 
 0.958
AQR98771.1
Sensory histidine kinase DcuS.
 
 
 0.860
dpiB
Sensor histidine kinase DpiB.
 
 
 0.815
cusS
Sensor kinase CusS.
 
 
 0.709
AQS00084.1
Putative histidine kinase sensor domain protein.
     
 0.663
AQR98888.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 
 0.657
barA_2
Signal transduction histidine-protein kinase BarA.
     
 0.598
barA_1
Signal transduction histidine-protein kinase BarA.
     
 0.556
cph1
Phytochrome-like protein cph1.
     
 0.513
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.