Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
citASensor histidine kinase CitA. (108 aa)    
Predicted Functional Partners:
dcuS
Sensor histidine kinase DcuS.
     0.964
dcuR
Transcriptional regulatory protein DcuR.
 
 
 0.963
acoR_1
Acetoin dehydrogenase operon transcriptional activator AcoR.
  
   
 0.512
acoR_2
Acetoin dehydrogenase operon transcriptional activator AcoR.
  
     0.484
AQS01374.1
Hypothetical protein.
       0.472
AQR98771.1
Sensory histidine kinase DcuS.
  
     0.430
rpoN
RNA polymerase sigma-54 factor.
  
     0.403
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.