STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleD_4Response regulator PleD. (294 aa)    
Predicted Functional Partners:
rpfG_9
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.962
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.947
phoP_2
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 
 
    0.901
yycF_1
Transcriptional regulatory protein YycF.
 
 
    0.890
dosP
Oxygen sensor protein DosP.
  
 0.885
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.838
rpfG_12
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 0.813
ycdT_1
Putative diguanylate cyclase YcdT.
  
     0.774
rpfG_7
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.763
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
 
 0.740
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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