STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zupTZinc transporter ZupT. (258 aa)    
Predicted Functional Partners:
csbC_1
Putative metabolite transport protein CsbC; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
     
 0.615
kup
Low affinity potassium transport system protein kup; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
      
 0.609
sodA
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.534
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
  
 0.531
niaX
Niacin transporter NiaX.
      
 0.529
prmC_1
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
    0.502
copA_4
Copper-exporting P-type ATPase A.
 
  
 0.502
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
 
  
 0.453
copA_3
Copper-exporting P-type ATPase A.
 
  
 0.452
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
       0.444
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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