STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yusVPutative siderophore transport system ATP-binding protein YusV. (251 aa)    
Predicted Functional Partners:
hmuU
Hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 
 0.997
btuF
Vitamin B12-binding protein precursor.
 
 
 0.996
tycC
Tyrocidine synthase 3.
  
  
 0.711
srfAA
Surfactin synthase subunit 1.
  
  
 0.711
mbtB_2
Phenyloxazoline synthase MbtB.
  
  
 0.562
dhbE
2,3-dihydroxybenzoate-AMP ligase.
  
  
 0.517
AQS00299.1
Hypothetical protein.
   
  
 0.510
efeU
Ferrous iron permease EfeU precursor.
   
  
 0.510
mnmA_3
tRNA-specific 2-thiouridylase MnmA.
 
     0.491
mbtB_1
Phenyloxazoline synthase MbtB.
  
  
 0.471
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.