STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01452.1Bacterial Ig-like domain protein. (423 aa)    
Predicted Functional Partners:
prsA
Foldase protein PrsA precursor.
   
 
 0.640
cbf2
Putative peptidyl-prolyl cis-trans isomerase Cbf2 precursor.
   
 
 0.640
XtmA
Terminase small subunit.
  
  
 0.584
rsgI_2
anti-sigma-I factor RsgI.
 
   
 0.515
pehX
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
  
  
 0.503
AQS02325.1
Hypothetical protein.
       0.445
mmpA
Metalloprotease MmpA.
   
  
 0.430
AQS01047.1
Preprotein translocase subunit YajC.
  
  
 0.410
barA_1
Signal transduction histidine-protein kinase BarA.
  
  
 0.402
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.