Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
puuR_2HTH-type transcriptional regulator PuuR. (184 aa)    
Predicted Functional Partners:
rhaS_5
HTH-type transcriptional activator RhaS.
 
 
 0.671
AQS01504.1
Hypothetical protein.
 
  
 0.670
rhaS_4
HTH-type transcriptional activator RhaS.
 
 
 0.664
pheA
P-protein.
  
  
 0.637
mngR
mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
  
 0.629
treR
Trehalose operon transcriptional repressor.
 
  
 0.612
cdr_1
Coenzyme A disulfide reductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.597
yvoA
HTH-type transcriptional repressor YvoA.
  
  
 0.561
lutR_1
HTH-type transcriptional regulator LutR.
 
  
 0.540
puuR_1
HTH-type transcriptional regulator PuuR.
 
 
0.535
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.