Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS01536.1Small, acid-soluble spore protein beta. (69 aa)    
Predicted Functional Partners:
AQS00869.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.692
tepA
Translocation-enhancing protein TepA.
  
     0.586
SpoIIGA
Sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.562
YqfD
Putative stage IV sporulation protein YqfD.
 
     0.554
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.549
SpoIIIAA
Hypothetical protein; Transcription termination factor Rho.
  
   
 0.549
mnmG_1
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.
  
     0.543
AQS00868.1
Stage III sporulation protein AC/AD protein family protein.
  
     0.517
spoVAD_1
Stage V sporulation protein AD.
  
  
 0.507
AQR98689.1
LysM domain protein.
  
     0.500
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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