STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrB_3ABC transporter ATP-binding protein YtrB. (298 aa)    
Predicted Functional Partners:
ytrA_3
HTH-type transcriptional repressor YtrA.
 
  
 0.937
AQS01546.1
Hypothetical protein.
       0.821
AQS01549.1
Hypothetical protein.
       0.821
ytrA_2
HTH-type transcriptional repressor YtrA.
 
  
 0.696
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.630
AQS01732.1
ABC-2 family transporter protein.
  
 
 0.557
AQS01734.1
ABC-2 family transporter protein.
  
 
 0.547
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.516
ftsH_2
ATP-dependent zinc metalloprotease FtsH.
  
 
   0.490
tcyN
L-cystine import ATP-binding protein TcyN.
  
     0.476
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.