STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ytrB_3ABC transporter ATP-binding protein YtrB. (298 aa)    
Predicted Functional Partners:
ytrA_3
HTH-type transcriptional repressor YtrA.
 
  
 0.943
AQS01546.1
Hypothetical protein.
       0.849
AQS01549.1
Hypothetical protein.
       0.849
AQR98828.1
ABC-2 family transporter protein.
  
 
 0.734
AQS01732.1
ABC-2 family transporter protein.
  
 
 0.716
AQS01734.1
ABC-2 family transporter protein.
  
 
 0.709
ytrA_2
HTH-type transcriptional repressor YtrA.
 
  
 0.647
AQS00422.1
Hypothetical protein.
  
 
 0.605
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
 
 0.592
atpG
ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
   0.584
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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