STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtrR_1HTH-type transcriptional regulator MtrR. (207 aa)    
Predicted Functional Partners:
AQS01576.1
Ferredoxin.
     
 0.663
fabH_2
3-oxoacyl-[acyl-carrier-protein] synthase 3.
     
 0.515
AQS01574.1
Hypothetical protein.
       0.509
AQS01577.1
Hypothetical protein.
       0.503
betI_2
HTH-type transcriptional regulator BetI.
  
     0.460
yttP
Putative HTH-type transcriptional regulator YttP.
  
     0.411
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 
 0.403
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.401
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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