STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytA_11Autolysin. (425 aa)    
Predicted Functional Partners:
lytA_16
Autolysin.
  
     0.724
toxB_4
Toxin B.
  
     0.652
AQR98393.1
Hypothetical protein.
  
     0.642
toxA_6
Toxin A.
  
     0.633
AQR98995.1
FHA domain protein.
   
 
 0.607
fhaB
FHA domain-containing protein FhaB.
   
 
 0.607
AQR98996.1
Hypothetical protein.
   
 
 0.601
AQS01615.1
Hypothetical protein.
       0.598
cap8A_2
Capsular polysaccharide type 8 biosynthesis protein cap8A.
    
 
 0.592
toxA_4
Toxin A.
 
     0.549
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.