STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
citC[citrate [pro-3S]-lyase] ligase. (341 aa)    
Predicted Functional Partners:
citE
Citrate lyase subunit beta.
 
  
 0.990
citD
Citrate lyase acyl carrier protein.
 
  
 0.990
citF
Citrate lyase alpha chain.
 
  
 0.988
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
  
 0.977
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
 
 
 0.975
accB_1
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
     
 0.481
YtsJ2
NAD-dependent malic enzyme.
  
  
 0.467
hacA_2
Homoaconitase large subunit.
       0.450
ttdA
L(+)-tartrate dehydratase subunit alpha.
  
  
 0.417
fumB
Fumarate hydratase class I, anaerobic.
  
  
 0.417
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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