Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mcbRHTH-type transcriptional regulator McbR. (224 aa)    
Predicted Functional Partners:
citG
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase.
       0.608
ilvH
Acetolactate synthase small subunit.
  
    0.532
treR
Trehalose operon transcriptional repressor.
  
   
 0.504
lutR_1
HTH-type transcriptional regulator LutR.
 
  
0.474
prmC_1
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
   
   0.471
ilvN
Acetolactate synthase isozyme 1 small subunit.
   
    0.457
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
 
   
 0.421
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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