Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xkdMPhage-like element PBSX protein XkdM. (138 aa)    
Predicted Functional Partners:
AQS01706.1
Phage tail sheath protein.
 
 
   0.982
XkdS
Hypothetical protein.
 
 
   0.944
AQS01155.1
Phage tail sheath protein.
 
 
   0.939
AQS00486.1
Phage tail sheath protein.
 
 
   0.934
AQS01702.1
Bacterial SH3 domain protein.
 
 
   0.912
AQS01696.1
Hypothetical protein.
 
 
   0.902
AQS01698.1
Baseplate J-like protein.
 
 
   0.899
XkdP
LysM domain/BON superfamily protein.
 
 
   0.898
AQS01146.1
Hypothetical protein.
 
 
   0.884
AQS01704.1
Phage XkdN-like protein.
 
     0.881
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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