STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01717.1Terminase-like family protein. (172 aa)    
Predicted Functional Partners:
AQS01715.1
Terminase-like family protein.
     0.982
XtmA
Terminase small subunit.
 
  
 0.961
AQS01698.1
Baseplate J-like protein.
 
  
 0.544
AQS01706.1
Phage tail sheath protein.
 
  
 0.522
AQS01716.1
GIY-YIG catalytic domain protein.
       0.511
XkdT2
Baseplate J-like protein.
 
  
 0.467
AQS01165.1
Phage portal protein, SPP1 Gp6-like.
 
  
 0.454
AQS00486.1
Phage tail sheath protein.
 
  
 0.451
XkdP
LysM domain/BON superfamily protein.
 
  
 0.437
AQS01711.1
Hypothetical protein.
 
     0.434
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.