STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XtmATerminase small subunit. (315 aa)    
Predicted Functional Partners:
AQS01717.1
Terminase-like family protein.
 
  
 0.961
AQS01715.1
Terminase-like family protein.
 
  
 0.868
AQS01706.1
Phage tail sheath protein.
 
  
 0.851
AQS00486.1
Phage tail sheath protein.
 
  
 0.818
AQS01155.1
Phage tail sheath protein.
 
  
 0.811
AQS01704.1
Phage XkdN-like protein.
 
  
 0.792
AQS01696.1
Hypothetical protein.
 
  
 0.787
XkdT1
Hypothetical protein.
 
  
 0.769
TMP
Phage-related minor tail protein.
 
     0.767
AQS00478.1
Hypothetical protein.
  
  
 0.751
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.