Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pel_1Pectate trisaccharide-lyase precursor. (582 aa)    
Predicted Functional Partners:
pelL
Pectate lyase L precursor.
   
 0.808
xynA
Endo-1,4-beta-xylanase A precursor; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.781
xynY
Endo-1,4-beta-xylanase Y precursor.
  
   
 0.752
xynD_1
Arabinoxylan arabinofuranohydrolase precursor.
 
   
 0.745
xynC
Glucuronoxylanase XynC precursor.
  
   
 0.741
GluB
Beta-glucanase precursor.
  
   
 0.737
AQS02223.1
ABC-2 family transporter protein.
   
    0.690
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.686
manA_2
Beta-mannanase/endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.677
pel_2
Pectate lyase precursor.
 
   
 0.677
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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