STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MarR2MarR family protein. (151 aa)    
Predicted Functional Partners:
AQS01761.1
Putative cyclase.
 
     0.841
AQS00161.1
Putative HTH-type transcriptional regulator.
  
     0.674
tetA_1
Tetracycline resistance protein, class C.
 
   
 0.500
slyA_1
Transcriptional regulator SlyA.
  
     0.477
opuCB
Glycine betaine/carnitine/choline transport system permease protein OpuCB.
  
  
 0.431
mepA_6
Multidrug export protein MepA.
 
  
 0.409
slyA_7
Transcriptional regulator SlyA.
  
     0.405
AQS01760.1
Metallo-beta-lactamase L1 precursor.
  
    0.404
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.