STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rhaS_5HTH-type transcriptional activator RhaS. (254 aa)    
Predicted Functional Partners:
soxS_2
Regulatory protein SoxS.
 
 
 0.917
marA_1
Multiple antibiotic resistance protein MarA.
 
 
0.811
rhaS_2
HTH-type transcriptional activator RhaS.
 
 
 
 0.799
rob_3
Right origin-binding protein.
 
 
 
 0.758
barA_1
Signal transduction histidine-protein kinase BarA.
  
  
 0.638
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.633
puuR_2
HTH-type transcriptional regulator PuuR.
 
 
 0.633
AQS02313.1
Glycosyl transferases group 1.
  
 
 0.627
wcaJ_2
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase.
  
  
 0.626
xyl3A
Xylan 1,4-beta-xylosidase precursor.
 
     0.608
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.