Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cph1Phytochrome-like protein cph1. (904 aa)    
Predicted Functional Partners:
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
0.981
AQS00084.1
Putative histidine kinase sensor domain protein.
  
 
 0.970
arcB
Aerobic respiration control sensor protein ArcB.
 
 
0.969
todS_6
Sensor histidine kinase TodS.
 
 
0.969
barA_2
Signal transduction histidine-protein kinase BarA.
 
 
 
0.951
cheV
Chemotaxis protein CheV.
  
 
 0.927
divL
Sensor protein DivL.
 
 
 0.910
todS_4
Sensor histidine kinase TodS.
 
 
 
0.903
cheY_7
Chemotaxis protein CheY.
 
 
 0.901
AQS01829.1
Putative response regulatory protein.
 
 
 
 0.898
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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