STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hydAPeriplasmic hydrogenase large subunit. (270 aa)    
Predicted Functional Partners:
hndD
NADP-reducing hydrogenase subunit HndC.
  
 
 0.920
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.908
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.908
ndhI
NAD(P)H-quinone oxidoreductase subunit I.
 
 
 0.781
puuB
Gamma-glutamylputrescine oxidoreductase.
 
  
 0.751
birA
Bifunctional ligase/repressor BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.744
rsxB_3
Electron transport complex subunit RsxB.
  
 
 0.723
rsxB_5
Electron transport complex subunit RsxB.
 
 
 
 0.720
AQS01576.1
Ferredoxin.
 
 
0.708
AQS02510.1
Ferredoxin.
 
 
0.708
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.