STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MsbA4Putative ABC transporter ATP-binding protein. (574 aa)    
Predicted Functional Partners:
dnaK_2
Chaperone protein DnaK; Belongs to the heat shock protein 70 family.
  
 0.763
dnaK_3
Chaperone protein DnaK.
  
 0.756
dnaK_1
Chaperone protein DnaK; Belongs to the heat shock protein 70 family.
  
 0.745
dnaJ_1
Chaperone protein DnaJ.
  
 
 0.741
dnaK_4
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.730
lolD_5
Lipoprotein-releasing system ATP-binding protein LolD.
    
0.729
pstB3
Phosphate import ATP-binding protein PstB 3; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.721
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
 
  
0.690
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.670
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
 
 
  
0.668
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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