STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS01867.1Putative efflux pump membrane fusion protein. (403 aa)    
Predicted Functional Partners:
swrC_2
Swarming motility protein SwrC.
 
   
 0.940
swrC_1
Swarming motility protein SwrC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.781
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 
 0.716
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 
 0.716
lagD_3
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 
 0.716
lagD_4
lactococcin-G-processing and transport ATP-binding protein LagD.
  
 
 0.716
apxIB
Toxin RTX-I translocation ATP-binding protein.
  
 
 0.716
AQR99241.1
Hypothetical protein.
  
 
 0.712
AQR98522.1
Outer membrane efflux protein.
  
 
 0.711
pepO_2
Neutral endopeptidase.
  
 
 0.711
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.