STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
swrC_2Swarming motility protein SwrC. (1027 aa)    
Predicted Functional Partners:
AQS01867.1
Putative efflux pump membrane fusion protein.
 
   
 0.940
emrK_1
Putative multidrug resistance protein EmrK; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.917
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.898
mdtA
Multidrug resistance protein MdtA.
 
   
 0.787
AQR98536.1
Peptidase family M50.
  
 
 0.752
AQS01047.1
Preprotein translocase subunit YajC.
  
 
 
 0.686
AQR98522.1
Outer membrane efflux protein.
  
 
 0.652
AQR99241.1
Hypothetical protein.
  
 
 0.650
pepO_2
Neutral endopeptidase.
  
 
 0.643
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 
 0.521
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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