Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiA1Chitinase A1 precursor; Belongs to the glycosyl hydrolase 18 family. (325 aa)    
Predicted Functional Partners:
plc_1
1-phosphatidylinositol phosphodiesterase precursor.
 
 
 
 0.711
pehX
Exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
   
 
 0.681
bglA_2
Beta-glucanase precursor.
  
  
 0.565
manA_2
Beta-mannanase/endoglucanase A precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
  
 0.537
bglA_3
Beta-glucanase precursor.
  
  
 0.525
smc_3
Chromosome partition protein Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
   
 
 0.516
AQR99722.1
Hypothetical protein.
   
 
 0.516
puuB
Gamma-glutamylputrescine oxidoreductase.
   
 
 0.516
AQS02344.1
Hypothetical protein.
   
 
 0.516
wapA_5
tRNA(Glu)-specific nuclease WapA precursor.
  
 
 0.511
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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