STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mdtCMultidrug resistance protein MdtC; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1033 aa)    
Predicted Functional Partners:
macA
Macrolide export protein MacA; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.982
emrK_1
Putative multidrug resistance protein EmrK; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.930
AQR98536.1
Peptidase family M50.
  
 
 0.752
AQS01047.1
Preprotein translocase subunit YajC.
  
 
 
 0.693
AQR98522.1
Outer membrane efflux protein.
  
 
 0.652
AQR99241.1
Hypothetical protein.
  
 
 0.650
pepO_2
Neutral endopeptidase.
  
 
 0.643
mdtA
Multidrug resistance protein MdtA.
 
   
 0.572
AQS01867.1
Putative efflux pump membrane fusion protein.
 
   
 0.543
barA_1
Signal transduction histidine-protein kinase BarA.
 
 
 
 0.501
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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