Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AQS01926.1GH3 auxin-responsive promoter. (557 aa)    
Predicted Functional Partners:
mbtB_2
Phenyloxazoline synthase MbtB.
  
  
 0.723
lgrD_2
Linear gramicidin synthase subunit D.
  
  
 0.661
pheA
P-protein.
     
 0.639
gapN_1
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.608
gapN_2
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.606
tycC
Tyrocidine synthase 3.
     
 0.598
srfAA
Surfactin synthase subunit 1.
     
 0.598
grsB_2
Gramicidin S synthase 2.
  
  
 0.588
adhE_1
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.578
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.571
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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