STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpx1Hydroperoxy fatty acid reductase gpx1; Belongs to the glutathione peroxidase family. (179 aa)    
Predicted Functional Partners:
trxB_2
Thioredoxin reductase.
  
  
 0.814
ytpP
Thioredoxin-like protein YtpP.
   
 0.621
grxC
Glutaredoxin-3.
  
 
 0.581
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
 
   
 0.558
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.539
hmp
Flavohemoprotein.
     
 0.500
ohrR_2
Organic hydroperoxide resistance transcriptional regulator.
 
  
 0.491
gap
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
  
 
 0.487
trxB_1
Thioredoxin reductase.
  
  
 0.476
AQR98894.1
NADH oxidase.
  
 
 0.462
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.