STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB_2Thioredoxin reductase. (288 aa)    
Predicted Functional Partners:
trxB_1
Thioredoxin reductase.
 
0.969
trxA
Thioredoxin; Belongs to the thioredoxin family.
 
 
 0.964
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.938
sufS_1
Cysteine desulfurase SufS.
 
 
 0.930
AQR99471.1
Thioredoxin C-2; Belongs to the thioredoxin family.
 
 
 0.908
AQS00030.1
Putative oxidoreductase.
     
  0.900
gpx1
Hydroperoxy fatty acid reductase gpx1; Belongs to the glutathione peroxidase family.
  
  
 0.814
ytpP
Thioredoxin-like protein YtpP.
  
 
 0.660
PedC
Hypothetical protein.
  
 
 0.638
serS
serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
  
 0.603
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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