STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytA_15Autolysin. (376 aa)    
Predicted Functional Partners:
LicA
Choline/ethanolamine kinase.
  
     0.732
AQS02053.1
Hypothetical protein.
  
     0.652
AQS01954.1
Glutathionylspermidine synthase.
 
     0.628
cwlC
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
  
     0.623
AQS00934.1
HIRAN domain protein.
  
     0.591
AQS02241.1
Hypothetical protein.
  
     0.587
AQR99421.1
O-antigen ligase.
  
     0.569
LicB1
EamA-like transporter family protein.
  
     0.550
AQS02325.1
Hypothetical protein.
 
     0.544
AQS00546.1
Hypothetical protein.
  
     0.542
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.