STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaEL-ribulose-5-phosphate 3-epimerase UlaE. (281 aa)    
Predicted Functional Partners:
ulaF_2
L-ribulose-5-phosphate 4-epimerase UlaF.
 
 0.990
ulaF_1
L-ribulose-5-phosphate 4-epimerase UlaF.
 
 0.974
fucA_2
L-fuculose phosphate aldolase.
 
 0.937
AQS01988.1
Hypothetical protein.
 
     0.788
ulaA
Ascorbate-specific permease IIC component UlaA.
 
     0.783
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
    0.782
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
     0.782
ulaC
Ascorbate-specific phosphotransferase enzyme IIA component.
  
     0.766
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Involved in the cleavage of the C1-C2 bond of 3D-(3,5/4)- trihydroxycyclohexane-1,2-dione (THcHDO) to yield 5-deoxy-glucuronate (5DG).
  
  
 0.759
iolB
5-deoxy-glucuronate isomerase.
  
  
 0.727
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.