STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YufPBeta-methylgalactoside transporter inner membrane component; Belongs to the binding-protein-dependent transport system permease family. (382 aa)    
Predicted Functional Partners:
YufQ
Branched-chain amino acid transport system / permease component; Belongs to the binding-protein-dependent transport system permease family.
 
0.998
mglA
Galactose/methyl galactoside import ATP-binding protein MglA.
 
 
 0.998
tmpC
Membrane lipoprotein TmpC precursor.
 
 
 0.984
cdd
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
 
  
 0.651
rbsA_2
Ribose import ATP-binding protein RbsA.
 
     0.625
araG
Arabinose import ATP-binding protein AraG.
 
     0.624
rbsA_1
Ribose import ATP-binding protein RbsA; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
     0.623
lsrA
Autoinducer 2 import ATP-binding protein LsrA.
 
     0.560
deoD
Purine nucleoside phosphorylase DeoD-type.
       0.435
AQS00106.1
Hypothetical protein.
   
    0.412
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.