STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pseGUDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase. (355 aa)    
Predicted Functional Partners:
pseI
Pseudaminic acid synthase.
 
 
 0.995
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.930
kpsU
3-deoxy-manno-octulosonate cytidylyltransferase.
 
  
 0.923
AQS02089.1
UDP-glucose 4-epimerase.
 
    0.911
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase.
 
     0.872
AQS02094.1
Hypothetical protein.
 
  
 0.871
AQS02105.1
Hypothetical protein.
 
   
 0.809
AQS02099.1
Hypothetical protein.
 
     0.773
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
 
  
 0.656
arnB_1
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.636
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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