STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sunS_1SPBc2 prophage-derived glycosyltransferase SunS. (350 aa)    
Predicted Functional Partners:
pseI
Pseudaminic acid synthase.
  
  
 0.772
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
  
  
 0.573
AQS02094.1
Hypothetical protein.
       0.562
FliD
Flagellar capping protein.
  
  
 0.556
AQS02096.1
Hypothetical protein.
  
  
 0.535
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase.
     
 0.534
AQS02089.1
UDP-glucose 4-epimerase.
  
 
 0.529
lagD_1
lactococcin-G-processing and transport ATP-binding protein LagD.
  
  
 0.501
lagD_2
lactococcin-G-processing and transport ATP-binding protein LagD.
  
  
 0.501
lagD_3
lactococcin-G-processing and transport ATP-binding protein LagD.
  
  
 0.501
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.