STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdsB3-deoxy-manno-octulosonate cytidylyltransferase. (244 aa)    
Predicted Functional Partners:
AQS02094.1
Hypothetical protein.
 
     0.933
pseI
Pseudaminic acid synthase.
 
     0.924
pseG
UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase.
 
     0.872
AQS02099.1
Hypothetical protein.
 
     0.852
AQS02105.1
Hypothetical protein.
 
     0.822
pseB
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.821
AQS02096.1
Hypothetical protein.
     
 0.786
AQS02089.1
UDP-glucose 4-epimerase.
 
   
 0.750
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
 
  
 0.637
AQS02313.1
Glycosyl transferases group 1.
     
 0.536
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.