STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02104.1Hypothetical protein. (194 aa)    
Predicted Functional Partners:
AQS02105.1
Hypothetical protein.
  
    0.862
flaB
Flagellin B.
  
   0.856
flgL
Flagellar hook-associated protein 3.
  
   0.752
hag
Flagellin.
  
   0.739
csrA
Hypothetical protein; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW.
   
   0.713
AQR99454.1
Hypothetical protein.
  
   0.704
fliW
Flagellar assembly factor FliW.
   
   0.685
kpsU
3-deoxy-manno-octulosonate cytidylyltransferase.
       0.618
ligC
4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
       0.588
btrR
L-glutamine:2-deoxy-scyllo-inosose aminotransferase.
       0.441
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.