STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02135.1Flavodoxin. (143 aa)    
Predicted Functional Partners:
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
     
 0.831
AQR99761.1
Hypothetical protein.
 
   
 0.819
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
     
 0.697
murG_2
UDP-N-acetylglucosamine transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
       0.602
rob_2
Right origin-binding protein.
  
  
 0.456
tycC
Tyrocidine synthase 3.
   
   0.443
srfAA
Surfactin synthase subunit 1.
   
   0.443
fliN
Flagellar motor switch protein FliN.
    
   0.438
cheC
CheY-P phosphatase CheC.
    
   0.438
dhbE
2,3-dihydroxybenzoate-AMP ligase.
   
    0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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