Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
pepF1_2Oligoendopeptidase F, plasmid. (594 aa)    
Predicted Functional Partners:
AQS02145.1
Hypothetical protein.
       0.655
gluP
Rhomboid protease GluP.
       0.563
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
  
 0.494
AQS02142.1
Hypothetical protein.
       0.494
AQS02146.1
Hypothetical protein.
       0.476
fliM
Flagellar motor switch protein FliM.
    
   0.470
pepV
beta-Ala-Xaa dipeptidase.
     
 0.437
cocE
Cocaine esterase.
  
  
 0.422
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
    0.418
dtpT
Di-/tripeptide transporter.
     
 0.410
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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