STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02168.1Helix-turn-helix domain protein. (424 aa)    
Predicted Functional Partners:
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
 
   
0.928
AQS02172.1
Hypothetical protein.
 
     0.842
AQR98485.1
Tetratricopeptide repeat protein.
  
 
   0.790
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
   
 0.780
AQS02241.1
Hypothetical protein.
 
     0.777
AQR98673.1
Endodeoxyribonuclease RusA.
 
   
 0.774
AQR99416.1
Tetratricopeptide repeat protein.
  
   
 0.773
AQR98334.1
Hypothetical protein.
  
   
 0.772
bepA
Beta-barrel assembly-enhancing protease.
  
   
 0.771
AQS02075.1
Flagellar hook-length control protein FliK.
  
     0.771
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.