STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AQS02172.1Hypothetical protein. (322 aa)    
Predicted Functional Partners:
AQS02171.1
RNase H.
 
     0.861
AQS02168.1
Helix-turn-helix domain protein.
 
     0.842
AQS02169.1
Anaerobic benzoate catabolism transcriptional regulator.
 
     0.817
AQR98559.1
Putative RNA polymerase sigma factor SigI.
  
     0.763
AQR98485.1
Tetratricopeptide repeat protein.
  
     0.758
AQR98673.1
Endodeoxyribonuclease RusA.
  
     0.754
AQR99416.1
Tetratricopeptide repeat protein.
  
     0.749
secE
Protein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.742
AQS02241.1
Hypothetical protein.
  
     0.742
AQR98675.1
Alpha/beta hydrolase family protein.
 
     0.741
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.