STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysKCysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. (303 aa)    
Predicted Functional Partners:
cysE_2
Serine acetyltransferase.
 
 0.998
cysE_1
Serine acetyltransferase.
 
 0.994
mccB
Cystathionine gamma-lyase.
  
 0.974
metC
Cystathionine beta-lyase.
  
 0.974
sir_3
Sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.960
serC
Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 
 0.934
aspC
Aspartate aminotransferase.
  
 0.909
AspB
Aspartate aminotransferase.
  
 0.909
asrC_2
Anaerobic sulfite reductase subunit C; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.908
asrA
Anaerobic sulfite reductase subunit A.
    
 0.907
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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