Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lon_2Lon protease. (640 aa)    
Predicted Functional Partners:
SpoVR
SpoVR family protein.
 
  
 0.996
YhbH
Stress response UPF0229 protein YhbH; Belongs to the UPF0229 family.
 
  
 0.996
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.714
spoIVA
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
   
  
 0.672
rbr
Rubrerythrin.
       0.514
spoIIID
Stage III sporulation protein D.
   
    0.457
AQS00870.1
Stage III sporulation protein SpoAB.
  
    0.415
ydiM_3
Inner membrane transport protein YdiM.
       0.412
fldA_1
Flavodoxin; Low-potential electron donor to a number of redox enzymes; Belongs to the flavodoxin family.
  
    0.409
AQR98761.1
Hypothetical protein.
   
    0.400
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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