STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cheY_7Chemotaxis protein CheY. (291 aa)    
Predicted Functional Partners:
cheX_2
CheY-P phosphatase CheX.
 
 
 
 0.965
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.950
AQS00084.1
Putative histidine kinase sensor domain protein.
  
 
 0.944
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.938
todS_6
Sensor histidine kinase TodS.
   
 
 0.912
cph1
Phytochrome-like protein cph1.
 
 
 0.902
cheV
Chemotaxis protein CheV.
 
 
 0.900
fliN
Flagellar motor switch protein FliN.
 
  
 0.883
arcB
Aerobic respiration control sensor protein ArcB.
  
 
0.865
zraS
Sensor protein ZraS.
  
 
 0.838
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.