STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiBPutative peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (224 aa)    
Predicted Functional Partners:
htpG_3
Chaperone protein HtpG.
 
 0.798
cshA_1
DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
 
 0.776
htpG_1
Chaperone protein HtpG.
  
 0.771
htpG_2
Chaperone protein HtpG.
  
 0.771
cshA_2
DEAD-box ATP-dependent RNA helicase CshA.
 
 0.769
cshA_3
DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family.
 
 0.755
dbpA
ATP-dependent RNA helicase DbpA; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit. Has an RNA-dependent ATPase activity, which is specific for 23S rRNA, and a 3' to 5' RNA helicase activity that uses the energy of ATP hydrolysis to destabilize and unwind short rRNA duplexes.
 
 0.754
AQR99922.1
Hypothetical protein.
   
 0.745
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.736
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.736
Your Current Organism:
Clostridium saccharobutylicum
NCBI taxonomy Id: 169679
Other names: ATCC BAA-117, C. saccharobutylicum, Clostridium saccharobutylicum Keis et al. 2001, DSM 13864, strain NCP 262
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